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DRX029790: PacBio RS II sequencing of SAMD00028456
79 PACBIO_SMRT (PacBio RS II) runs: 12.9M spots, 66.7G bases, 224.5Gb downloads

Submitted by: National Institute of Agrobiological Sciences (Japan) (NIAS)
Study: Vigna genome project (V. angularis var. angularis)
show Abstracthide Abstract
Genus Vigna consists of legume crops such as azuki bean as well as a number of wild species. One of the most attractive features of the genus Vigna is the great adaptability of the wild species to severe environmental conditions including high salt (400mM NaCl), acid (pH3) or alkaline (pH10) soil, and drought (deprived of water for 1 month). By figuring out the mechanisms of how they adapt to such environments, it would be possible to generate novel crops tolerant to the stress conditions. As a first step to establish the genome basis of the genus Vigna, we sequenced the genome of azuki bean (V. angularis).
Sample: Genomic DNA of azuki bean (Shumari)
SAMD00028456 • DRS022035 • All experiments • All runs
Library:
Name: VIGAN_PACBIO_P5C3
Instrument: PacBio RS II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 79 runs, 12.9M spots, 66.7G bases, 224.5Gb
Run# of Spots# of BasesSizePublished
DRR033066163,482910.9M3Gb2016-03-09
DRR033024163,4821.1G3.7Gb2016-03-09
DRR032989163,482388.9M1.4Gb2016-03-09
DRR033061163,4821.3G4.1Gb2016-03-09
DRR033021163,4821.3G4.2Gb2016-03-09
DRR033017163,482667.6M2.3Gb2016-03-09
DRR033034163,482906.6M3.1Gb2016-03-09
DRR033006163,4821.1G3.6Gb2016-03-09
DRR033009163,4821.1G3.9Gb2016-03-09
DRR033031163,4821.1G3.7Gb2016-03-09
DRR032992163,482399.7M1.4Gb2016-03-09
DRR033037163,482679.9M2.3Gb2016-03-09
DRR033044163,482952.2M3.1Gb2016-03-09
DRR032991163,482395M1.4Gb2016-03-09
DRR033065163,482936.3M3.1Gb2016-03-09
There are 64 omitted runs. See all runs in Run Selector.

ID:
2314630

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